STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SRSF6Serine and arginine rich splicing factor 6. (232 aa)    
Predicted Functional Partners:
ncbp2
Nuclear cap binding protein subunit 2.
    
 0.913
ENSCHAP00000060579
annotation not available
 
      0.899
ENSCHAP00000047530
SRSF protein kinase 1a.
    
 0.894
srsf3
Serine and arginine rich splicing factor 3.
   
 0.878
cdc5l
Cell division cycle 5 like.
   
 0.877
LOC105898141
SRSF protein kinase 1-like.
    
 0.877
cstf3
Cleavage stimulation factor subunit 3.
   
 0.874
NCBP1
Nuclear cap binding protein subunit 1.
   
 0.865
LOC105903575
pre-mRNA 3'-end-processing factor FIP1-like.
   
 0.850
pcf11
PCF11 cleavage and polyadenylation factor subunit.
   
 0.847
Your Current Organism:
Clupea harengus
NCBI taxonomy Id: 7950
Other names: Atlantic herring, C. harengus, Clupea harengus harengus
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.