STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
pbdc1Polysaccharide biosynthesis domain containing 1. (168 aa)    
Predicted Functional Partners:
ttll12
Tubulin tyrosine ligase like 12.
    
   0.835
ENSCHAP00000001552
Programmed cell death 5.
   
    0.723
mysm1
Myb like, SWIRM and MPN domains 1.
   
 
 0.650
ENSCHAP00000059883
Prefoldin subunit 2.
   
    0.616
polr2h
RNA polymerase II subunit H.
   
   0.595
ENSCHAP00000046785
FCF1 rRNA-processing protein.
   
    0.594
LOC105889298
Elongation factor 1-alpha-like.
    
   0.570
LOC105912050
Elongation factor 1-alpha, somatic form.
    
   0.570
LOC105892154
Elongation factor 1-alpha.
    
   0.570
LOC105906389
Elongation factor 1-alpha 2.
    
   0.570
Your Current Organism:
Clupea harengus
NCBI taxonomy Id: 7950
Other names: Atlantic herring, C. harengus, Clupea harengus harengus
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.