STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
zic1Zic family member 1. (442 aa)    
Predicted Functional Partners:
svep1
Sushi, von Willebrand factor type A, EGF and pentraxin domain containing 1.
    
 0.697
ripk4
Receptor interacting serine/threonine kinase 4.
    
 0.695
ENSCHAP00000029199
Recombination activating 1.
   
 
 0.636
foxd3
Forkhead box D3.
    
 0.629
tfap2e
Transcription factor AP-2 epsilon.
   
 
 0.607
ppil6
Peptidylprolyl isomerase like 6.
    
  0.599
leo1
LEO1 homolog, Paf1/RNA polymerase II complex component.
    
  0.596
ENSCHAP00000015375
Ectodermal-neural cortex 1.
    
 0.580
mysm1
Myb like, SWIRM and MPN domains 1.
   
  0.558
sox10
SRY-box transcription factor 10.
    
 0.539
Your Current Organism:
Clupea harengus
NCBI taxonomy Id: 7950
Other names: Atlantic herring, C. harengus, Clupea harengus harengus
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.