STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ENSCHAP00000060940DDB1 and CUL4 associated factor 12. (430 aa)    
Predicted Functional Partners:
ENSCHAP00000012285
Damage-specific DNA binding protein 1.
    
 0.997
ENSCHAP00000044410
Cullin 4B.
    
 0.973
dcaf5
DDB1 and CUL4 associated factor 5.
     
 0.963
ENSCHAP00000050211
Ddb1 and cul4 associated factor 6.
     
 0.963
ENSCHAP00000019713
WD repeat domain 21.
     
 0.961
dcaf8
DDB1 and CUL4 associated factor 8.
     
 0.954
ENSCHAP00000050553
WD repeat domain 76.
     
 0.950
ENSCHAP00000025493
WD repeat domain 32.
     
 0.943
wdtc1
WD and tetratricopeptide repeats 1.
     
 0.940
DCAF1
DDB1 and CUL4 associated factor 1.
     
 0.936
Your Current Organism:
Clupea harengus
NCBI taxonomy Id: 7950
Other names: Atlantic herring, C. harengus, Clupea harengus harengus
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.