STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ENSCHAP00000061047Tetratricopeptide repeat domain 38. (479 aa)    
Predicted Functional Partners:
ENSCHAP00000037798
tRNA 5-methylaminomethyl-2-thiouridylate methyltransferase.
 
    
 0.603
ENSCHAP00000021066
annotation not available
      
 0.522
ENSCHAP00000052432
annotation not available
      
 0.514
ENSCHAP00000008166
Zinc finger, CCHC domain containing 17.
      
 0.445
ENSCHAP00000024162
DEAD (Asp-Glu-Ala-Asp) box polypeptide 28.
      
 0.445
fam118b
Family with sequence similarity 118 member B.
      
 0.420
LOC105913440
G2 and S phase-expressed protein 1-like.
      
 0.410
hdhd2
Haloacid dehalogenase like hydrolase domain containing 2.
      
 0.408
ENOSF1
Enolase superfamily member 1.
      
 0.400
bms1
BMS1 ribosome biogenesis factor.
      
 0.400
Your Current Organism:
Clupea harengus
NCBI taxonomy Id: 7950
Other names: Atlantic herring, C. harengus, Clupea harengus harengus
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.