STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ENSCHAP00000061056Nephronectin a. (534 aa)    
Predicted Functional Partners:
ENSCHAP00000042663
Integrin, alpha 2b.
     
 0.900
ENSCHAP00000028950
Fraser extracellular matrix complex subunit 1.
   
 0.898
ENSCHAP00000016350
Fras1 related extracellular matrix 1a.
    
 0.874
ENSCHAP00000022264
Fras1 related extracellular matrix 1b.
    
 0.874
ENSCHAP00000016743
FRAS1 related extracellular matrix 2b.
    
  0.869
ENSCHAP00000010301
Integrin, beta 1b.
    
 0.864
ENSCHAP00000043439
Fras1 related extracellular matrix 3.
    
  0.850
frem2
FRAS1 related extracellular matrix 2.
    
  0.798
mysm1
Myb like, SWIRM and MPN domains 1.
    
 0.739
ENSCHAP00000021246
Translocase of outer mitochondrial membrane 20.
    
 0.716
Your Current Organism:
Clupea harengus
NCBI taxonomy Id: 7950
Other names: Atlantic herring, C. harengus, Clupea harengus harengus
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.