STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RAB9ARAB9A, member RAS oncogene family. (201 aa)    
Predicted Functional Partners:
ccz1
CCZ1 homolog, vacuolar protein trafficking and biogenesis associated.
    
 0.914
ENSCHAP00000007653
VPS41 subunit of HOPS complex.
    
 
 0.911
ENSCHAP00000014840
Vacuolar protein sorting 16 homolog.
    
 
 0.911
vps18
VPS18 core subunit of CORVET and HOPS complexes.
   
 
 0.911
vps11
VPS11 core subunit of CORVET and HOPS complexes.
    
 
 0.910
ENSCHAP00000014626
annotation not available
     
 0.876
ENSCHAP00000032071
RAB9B, member RAS oncogene family.
  
  
 
0.849
ENSCHAP00000023906
GDP dissociation inhibitor 1.
    
 0.846
gdi1
GDP dissociation inhibitor 1.
    
 0.846
gdi2
GDP dissociation inhibitor 2.
    
 0.846
Your Current Organism:
Clupea harengus
NCBI taxonomy Id: 7950
Other names: Atlantic herring, C. harengus, Clupea harengus harengus
Server load: low (14%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.