STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ndpNorrin cystine knot growth factor NDP. (136 aa)    
Predicted Functional Partners:
ENSCHAP00000050374
Frizzled class receptor 4.
    
 
 0.974
ENSCHAP00000008683
FAU ubiquitin like and ribosomal protein S30 fusion a.
   
  0.966
fzd10
Frizzled class receptor 10.
    
 
 0.833
ENSCHAP00000022605
Frizzled class receptor 9b.
    
 
 0.756
ENSCHAP00000039959
Frizzled class receptor 9a.
    
 
 0.756
gle1
GLE1 RNA export mediator.
    
 0.697
ENSCHAP00000007939
Ribosomal protein S28.
   
  0.669
ENSCHAP00000028950
Fraser extracellular matrix complex subunit 1.
    
 0.661
ENSCHAP00000009160
RAN binding protein 2.
   
 
  0.655
rps11
Ribosomal protein S11.
   
 0.650
Your Current Organism:
Clupea harengus
NCBI taxonomy Id: 7950
Other names: Atlantic herring, C. harengus, Clupea harengus harengus
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.