STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ENSCHAP00000061965Glutamate receptor, ionotropic, AMPA 2a. (897 aa)    
Predicted Functional Partners:
cacng3
Calcium voltage-gated channel auxiliary subunit gamma 3.
    
 0.989
ENSCHAP00000035944
Protein interacting with prkca 1.
    
 0.967
ENSCHAP00000016533
Glutamate receptor interacting protein 1.
    
 0.946
ENSCHAP00000052496
Glutamate receptor interacting protein 2a.
    
 0.946
ENSCHAP00000004955
Cornichon family AMPA receptor auxiliary protein 3.
    
 0.935
cnih2
Cornichon family AMPA receptor auxiliary protein 2.
    
 0.935
LOC105894622
Voltage-dependent calcium channel gamma-4 subunit-like.
    
 0.900
ENSCHAP00000004055
Calcium channel, voltage-dependent, gamma subunit 4a.
   
 0.888
CACNG2
Voltage-dependent calcium channel gamma-2 subunit.
   
 0.888
ENSCHAP00000007640
annotation not available
   
 0.888
Your Current Organism:
Clupea harengus
NCBI taxonomy Id: 7950
Other names: Atlantic herring, C. harengus, Clupea harengus harengus
Server load: low (14%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.