STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ENSCHAP00000062423F-box and WD repeat domain containing 4. (415 aa)    
Predicted Functional Partners:
CUL1
Cullin 1.
    
 0.894
LOC105907046
Cullin-1.
    
 0.894
SKP1
S-phase kinase-associated protein 1-like.
    
 0.884
ENSCHAP00000052411
S-phase kinase-associated protein 1.
    
 0.884
ENSCHAP00000027667
Cullin 3a.
    
  0.800
txndc9
Thioredoxin domain containing 9.
    
   0.798
cct5
Chaperonin containing TCP1 subunit 5.
    
 0.779
ENSCHAP00000038095
CDK2 associated cullin domain 1.
    
  0.778
cct4
Chaperonin containing TCP1 subunit 4.
    
 0.729
fbxw5
F-box and WD repeat domain containing 5.
     
 0.676
Your Current Organism:
Clupea harengus
NCBI taxonomy Id: 7950
Other names: Atlantic herring, C. harengus, Clupea harengus harengus
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.