STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC105908271Cathepsin L1-like. (387 aa)    
Predicted Functional Partners:
rps14
Ribosomal protein S14.
   
 0.689
ENSCHAP00000047683
CD74 molecule, major histocompatibility complex, class II invariant chain a.
   
 0.689
ENSCHAP00000012516
Cathepsin H.
  
 
0.680
ENSCHAP00000019636
Cathepsin F.
  
0.680
ENSCHAP00000017414
Cathepsin O.
  
0.664
ENSCHAP00000021622
Cathepsin C.
  
0.642
ctsz
Cathepsin Z.
   
0.609
ENSCHAP00000021749
annotation not available
   
0.609
ENSCHAP00000033755
annotation not available
   
 0.585
ENSCHAP00000000142
Granulin b.
   
 0.575
Your Current Organism:
Clupea harengus
NCBI taxonomy Id: 7950
Other names: Atlantic herring, C. harengus, Clupea harengus harengus
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.