STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ENSCHAP00000062556RNA binding motif protein 19. (967 aa)    
Predicted Functional Partners:
LOC105902840
Periodic tryptophan protein 2 homolog.
   
 0.999
ENSCHAP00000043355
IMP U3 small nucleolar ribonucleoprotein 4.
   
  0.999
bms1
BMS1 ribosome biogenesis factor.
   
 0.999
bysl
Bystin like.
   
 0.998
ENSCHAP00000013939
annotation not available
   
 0.997
ENSCHAP00000017872
UTP4 small subunit processome component.
   
  0.997
ENSCHAP00000051587
WD repeat domain 36.
   
 0.997
wdr46
WD repeat domain 46.
   
  0.997
ENSCHAP00000002502
annotation not available
   
 
 0.996
ENSCHAP00000006597
Pescadillo.
   
 
 0.996
Your Current Organism:
Clupea harengus
NCBI taxonomy Id: 7950
Other names: Atlantic herring, C. harengus, Clupea harengus harengus
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.