STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ENSCHAP00000062670Rho guanine nucleotide exchange factor (GEF) 38. (799 aa)    
Predicted Functional Partners:
ENSCHAP00000047261
Bridging integrator 1a.
    
 
 0.881
ENSCHAP00000048365
Amphiphysin.
    
 
 0.881
ENSCHAP00000055104
Bridging integrator 2b.
    
 
 0.881
ENSCHAP00000018026
annotation not available
    
 0.774
LOC105906845
Cell division control protein 42 homolog.
    
 0.774
ENSCHAP00000003808
annotation not available
    
 0.719
ENSCHAP00000028284
annotation not available
    
 0.719
LOC105888587
Rho-related GTP-binding protein RhoU-like.
    
 0.717
LOC105892187
Ras-related C3 botulinum toxin substrate 2.
    
 0.717
LOC105899722
Rho-related GTP-binding protein RhoU-like.
    
 0.717
Your Current Organism:
Clupea harengus
NCBI taxonomy Id: 7950
Other names: Atlantic herring, C. harengus, Clupea harengus harengus
Server load: low (20%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.