STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ttc27Tetratricopeptide repeat domain 27. (854 aa)    
Predicted Functional Partners:
LOC105902840
Periodic tryptophan protein 2 homolog.
   
    0.932
ENSCHAP00000051587
WD repeat domain 36.
   
    0.919
wdr3
WD repeat domain 3.
   
  
 0.910
nat10
N-acetyltransferase 10.
   
    0.901
tbl3
Transducin beta like 3.
   
  
 0.885
efl1
Elongation factor like GTPase 1.
   
 
 0.865
ENSCHAP00000050426
HEAT repeat containing 1.
   
    0.865
ENSCHAP00000012595
Polymerase (RNA) III (DNA directed) polypeptide B.
   
    0.861
ENSCHAP00000017756
Ribosomal RNA processing 12 homolog.
   
    0.849
tsr1
TSR1 ribosome maturation factor.
   
    0.847
Your Current Organism:
Clupea harengus
NCBI taxonomy Id: 7950
Other names: Atlantic herring, C. harengus, Clupea harengus harengus
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.