STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ENSCHAP00000062832BicC family RNA binding protein 1a. (901 aa)    
Predicted Functional Partners:
ENSCHAP00000015138
Terminal uridylyl transferase 1, U6 snRNA-specific.
   
 0.613
ENSCHAP00000024409
Mitochondrial poly(A) polymerase.
   
 0.613
ENSCHAP00000024467
annotation not available
   
 0.613
TUT4
Terminal uridylyl transferase 4.
   
 0.613
ENSCHAP00000002892
Cugbp, Elav-like family member 1.
   
 
 0.469
ENSCHAP00000029983
Cugbp, Elav-like family member 2.
   
 
 0.469
ENSCHAP00000043288
annotation not available
   
 
 0.469
ENSCHAP00000053778
Anaphase promoting complex subunit 7.
   
    0.469
pum2
Pumilio RNA binding family member 2.
   
 
 0.462
ENSCHAP00000060015
Pumilio RNA-binding family member 1.
   
 
 0.462
Your Current Organism:
Clupea harengus
NCBI taxonomy Id: 7950
Other names: Atlantic herring, C. harengus, Clupea harengus harengus
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