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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AEH22121.1PFAM: Lytic transglycosylase-like, catalytic; KEGG: sfu:Sfum_0050 lytic transglycosylase catalytic subunit. (194 aa)    
Predicted Functional Partners:
AEH22276.1
PFAM: Peptidase M23; KEGG: hth:HTH_0200 putative lipoprotein.
 
     0.650
AEH22122.1
PFAM: Mechanosensitive ion channel MscS; KEGG: hth:HTH_1400 mechanosensitive ion channel.
       0.545
AEH22123.1
Pilin; KEGG: aae:aq_1434 pilin.
       0.445
AEH22124.1
Pilin; KEGG: hya:HY04AAS1_0157 pilin.
       0.445
AEH22125.1
KEGG: hya:HY04AAS1_0156 hypothetical protein.
       0.444
AEH22126.1
KEGG: hya:HY04AAS1_0155 hypothetical protein.
       0.439
Your Current Organism:
Thermodesulfobacterium geofontis
NCBI taxonomy Id: 795359
Other names: T. geofontis OPF15, Thermodesulfobacterium geofontis OPF15, Thermodesulfobacterium sp. OPF15
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