Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
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Co-expression
Experiments
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[Homology]
Score
AEH22169.1KEGG: pcu:pc0862 hypothetical protein. (612 aa)    
Predicted Functional Partners:
AEH22168.1
KEGG: pcu:pc0861 hypothetical protein; PFAM: ATPase associated with various cellular activities, AAA-5; SMART: ATPase, AAA+ type, core.
 
     0.952
AEH23051.1
KEGG: dte:Dester_1082 hypothetical protein.
  
     0.713
AEH22170.1
KEGG: sfu:Sfum_3765 two component sigma54 specific fis family transcriptional regulator; PFAM: RNA polymerase sigma factor 54, interaction; Helix-turn-helix, Fis-type; SMART: ATPase, AAA+ type, core.
       0.615
AEH23554.1
Hypothetical protein.
  
     0.568
AEH22171.1
KEGG: dma:DMR_31680 hypothetical protein.
       0.561
AEH22618.1
PFAM: ATP-grasp fold, RimK-type; KEGG: dol:Dole_1115 RimK domain-containing protein ATP-grasp.
  
     0.559
AEH22172.1
KEGG: cni:Calni_1809 two component, sigma54 specific, transcriptional regulator, fis family; PFAM: RNA polymerase sigma factor 54, interaction; Helix-turn-helix, Fis-type; SMART: ATPase, AAA+ type, core.
       0.550
AEH22423.1
KEGG: dte:Dester_1082 hypothetical protein.
  
     0.546
AEH22181.1
PFAM: Magnesium transporter, MgtE intracellular region; KEGG: das:Daes_3004 MgtE intracellular region.
 
     0.533
AEH22173.1
Flagellar basal-body rod protein FlgB; Structural component of flagellum, the bacterial motility apparatus. Part of the rod structure of flagellar basal body.
       0.526
Your Current Organism:
Thermodesulfobacterium geofontis
NCBI taxonomy Id: 795359
Other names: T. geofontis OPF15, Thermodesulfobacterium geofontis OPF15, Thermodesulfobacterium sp. OPF15
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