AEH22198.1 protein (Thermodesulfobacterium geofontis)

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Score

AEH22198.1

PFAM: Protein of unknown function DUF177; KEGG: tye:THEYE_A1480 hypothetical protein. (177 aa)

Predicted Functional Partners:

rpmF

0.979

rpsC

0.923

rpsF

0.913

rplK

0.904

rplA

0.897

rpsB

0.892

rpsP

0.891

rplC

0.891

infC

0.889

rplM

0.888

Your Current Organism:

Thermodesulfobacterium geofontis

NCBI taxonomy Id: 795359
Other names: T. geofontis OPF15, Thermodesulfobacterium geofontis OPF15, Thermodesulfobacterium sp. OPF15

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
AEH22198.1	infC	TOPB45_0082	TOPB45_0689	PFAM: Protein of unknown function DUF177; KEGG: tye:THEYE_A1480 hypothetical protein.	Translation initiation factor IF-3; IF-3 binds to the 30S ribosomal subunit and shifts the equilibrum between 70S ribosomes and their 50S and 30S subunits in favor of the free subunits, thus enhancing the availability of 30S subunits on which protein synthesis initiation begins.	0.889
AEH22198.1	rplA	TOPB45_0082	TOPB45_0167	PFAM: Protein of unknown function DUF177; KEGG: tye:THEYE_A1480 hypothetical protein.	Ribosomal protein L1; Binds directly to 23S rRNA. The L1 stalk is quite mobile in the ribosome, and is involved in E site tRNA release.	0.897
AEH22198.1	rplC	TOPB45_0082	TOPB45_0753	PFAM: Protein of unknown function DUF177; KEGG: tye:THEYE_A1480 hypothetical protein.	50S ribosomal protein L3; One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit; Belongs to the universal ribosomal protein uL3 family.	0.891
AEH22198.1	rplK	TOPB45_0082	TOPB45_0168	PFAM: Protein of unknown function DUF177; KEGG: tye:THEYE_A1480 hypothetical protein.	Ribosomal protein L11; Forms part of the ribosomal stalk which helps the ribosome interact with GTP-bound translation factors.	0.904
AEH22198.1	rplM	TOPB45_0082	TOPB45_0715	PFAM: Protein of unknown function DUF177; KEGG: tye:THEYE_A1480 hypothetical protein.	Ribosomal protein L13; This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly.	0.888
AEH22198.1	rpmF	TOPB45_0082	TOPB45_0083	PFAM: Protein of unknown function DUF177; KEGG: tye:THEYE_A1480 hypothetical protein.	TIGRFAM: Ribosomal protein L32p; HAMAP: Ribosomal protein L32p; KEGG: geo:Geob_2610 50S ribosomal protein L32; PFAM: Ribosomal protein L32p; Belongs to the bacterial ribosomal protein bL32 family.	0.979
AEH22198.1	rpsB	TOPB45_0082	TOPB45_1015	PFAM: Protein of unknown function DUF177; KEGG: tye:THEYE_A1480 hypothetical protein.	Ribosomal protein S2; KEGG: glo:Glov_2708 30S ribosomal protein S2; TIGRFAM: Ribosomal protein S2, bacteria/mitochondria/plastid; PFAM: Ribosomal protein S2; Belongs to the universal ribosomal protein uS2 family.	0.892
AEH22198.1	rpsC	TOPB45_0082	TOPB45_0759	PFAM: Protein of unknown function DUF177; KEGG: tye:THEYE_A1480 hypothetical protein.	Ribosomal protein S3; Binds the lower part of the 30S subunit head. Binds mRNA in the 70S ribosome, positioning it for translation; Belongs to the universal ribosomal protein uS3 family.	0.923
AEH22198.1	rpsF	TOPB45_0082	TOPB45_0190	PFAM: Protein of unknown function DUF177; KEGG: tye:THEYE_A1480 hypothetical protein.	30S ribosomal protein S6; Binds together with S18 to 16S ribosomal RNA.	0.913
AEH22198.1	rpsP	TOPB45_0082	TOPB45_0706	PFAM: Protein of unknown function DUF177; KEGG: tye:THEYE_A1480 hypothetical protein.	TIGRFAM: Ribosomal protein S16; HAMAP: Ribosomal protein S16; KEGG: cth:Cthe_0769 30S ribosomal protein S16; PFAM: Ribosomal protein S16; Belongs to the bacterial ribosomal protein bS16 family.	0.891
infC	AEH22198.1	TOPB45_0689	TOPB45_0082	Translation initiation factor IF-3; IF-3 binds to the 30S ribosomal subunit and shifts the equilibrum between 70S ribosomes and their 50S and 30S subunits in favor of the free subunits, thus enhancing the availability of 30S subunits on which protein synthesis initiation begins.	PFAM: Protein of unknown function DUF177; KEGG: tye:THEYE_A1480 hypothetical protein.	0.889
infC	rplA	TOPB45_0689	TOPB45_0167	Translation initiation factor IF-3; IF-3 binds to the 30S ribosomal subunit and shifts the equilibrum between 70S ribosomes and their 50S and 30S subunits in favor of the free subunits, thus enhancing the availability of 30S subunits on which protein synthesis initiation begins.	Ribosomal protein L1; Binds directly to 23S rRNA. The L1 stalk is quite mobile in the ribosome, and is involved in E site tRNA release.	0.927
infC	rplC	TOPB45_0689	TOPB45_0753	Translation initiation factor IF-3; IF-3 binds to the 30S ribosomal subunit and shifts the equilibrum between 70S ribosomes and their 50S and 30S subunits in favor of the free subunits, thus enhancing the availability of 30S subunits on which protein synthesis initiation begins.	50S ribosomal protein L3; One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit; Belongs to the universal ribosomal protein uL3 family.	0.932
infC	rplK	TOPB45_0689	TOPB45_0168	Translation initiation factor IF-3; IF-3 binds to the 30S ribosomal subunit and shifts the equilibrum between 70S ribosomes and their 50S and 30S subunits in favor of the free subunits, thus enhancing the availability of 30S subunits on which protein synthesis initiation begins.	Ribosomal protein L11; Forms part of the ribosomal stalk which helps the ribosome interact with GTP-bound translation factors.	0.932
infC	rplM	TOPB45_0689	TOPB45_0715	Translation initiation factor IF-3; IF-3 binds to the 30S ribosomal subunit and shifts the equilibrum between 70S ribosomes and their 50S and 30S subunits in favor of the free subunits, thus enhancing the availability of 30S subunits on which protein synthesis initiation begins.	Ribosomal protein L13; This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly.	0.956
infC	rpmF	TOPB45_0689	TOPB45_0083	Translation initiation factor IF-3; IF-3 binds to the 30S ribosomal subunit and shifts the equilibrum between 70S ribosomes and their 50S and 30S subunits in favor of the free subunits, thus enhancing the availability of 30S subunits on which protein synthesis initiation begins.	TIGRFAM: Ribosomal protein L32p; HAMAP: Ribosomal protein L32p; KEGG: geo:Geob_2610 50S ribosomal protein L32; PFAM: Ribosomal protein L32p; Belongs to the bacterial ribosomal protein bL32 family.	0.904
infC	rpsB	TOPB45_0689	TOPB45_1015	Translation initiation factor IF-3; IF-3 binds to the 30S ribosomal subunit and shifts the equilibrum between 70S ribosomes and their 50S and 30S subunits in favor of the free subunits, thus enhancing the availability of 30S subunits on which protein synthesis initiation begins.	Ribosomal protein S2; KEGG: glo:Glov_2708 30S ribosomal protein S2; TIGRFAM: Ribosomal protein S2, bacteria/mitochondria/plastid; PFAM: Ribosomal protein S2; Belongs to the universal ribosomal protein uS2 family.	0.969
infC	rpsC	TOPB45_0689	TOPB45_0759	Translation initiation factor IF-3; IF-3 binds to the 30S ribosomal subunit and shifts the equilibrum between 70S ribosomes and their 50S and 30S subunits in favor of the free subunits, thus enhancing the availability of 30S subunits on which protein synthesis initiation begins.	Ribosomal protein S3; Binds the lower part of the 30S subunit head. Binds mRNA in the 70S ribosome, positioning it for translation; Belongs to the universal ribosomal protein uS3 family.	0.965
infC	rpsF	TOPB45_0689	TOPB45_0190	Translation initiation factor IF-3; IF-3 binds to the 30S ribosomal subunit and shifts the equilibrum between 70S ribosomes and their 50S and 30S subunits in favor of the free subunits, thus enhancing the availability of 30S subunits on which protein synthesis initiation begins.	30S ribosomal protein S6; Binds together with S18 to 16S ribosomal RNA.	0.961
infC	rpsP	TOPB45_0689	TOPB45_0706	Translation initiation factor IF-3; IF-3 binds to the 30S ribosomal subunit and shifts the equilibrum between 70S ribosomes and their 50S and 30S subunits in favor of the free subunits, thus enhancing the availability of 30S subunits on which protein synthesis initiation begins.	TIGRFAM: Ribosomal protein S16; HAMAP: Ribosomal protein S16; KEGG: cth:Cthe_0769 30S ribosomal protein S16; PFAM: Ribosomal protein S16; Belongs to the bacterial ribosomal protein bS16 family.	0.942