Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
AEH22271.1DnaJ-like, subfamily C, domain-containing protein; PFAM: DnaJ homologue, subfamily C, member 28, conserved domain; KEGG: sfu:Sfum_2138 hypothetical protein. (153 aa)    
Predicted Functional Partners:
AEH22270.1
SMART: Tetratricopeptide repeat; KEGG: dps:DP1944 hypothetical protein.
       0.795
AEH22272.1
Riboflavin biosynthesis protein RibD; Converts 2,5-diamino-6-(ribosylamino)-4(3h)-pyrimidinone 5'- phosphate into 5-amino-6-(ribosylamino)-2,4(1h,3h)-pyrimidinedione 5'- phosphate; In the C-terminal section; belongs to the HTP reductase family.
       0.791
AEH22269.1
PFAM: Flavin reductase-like, FMN-binding; KEGG: tme:Tmel_1752 flavin reductase domain-containing protein.
       0.764
rnc
Ribonuclease 3; Digests double-stranded RNA. Involved in the processing of primary rRNA transcript to yield the immediate precursors to the large and small rRNAs (23S and 16S). Processes some mRNAs, and tRNAs when they are encoded in the rRNA operon. Processes pre-crRNA and tracrRNA of type II CRISPR loci if present in the organism.
   
    0.634
AEH23697.1
PFAM: UspA; KEGG: dbr:Deba_0851 UspA domain protein.
  
  
 0.446
AEH22759.1
KEGG: pas:Pars_0947 CBS domain-containing protein; PFAM: Cystathionine beta-synthase, core; Major facilitator superfamily MFS-1; SMART: Cystathionine beta-synthase, core.
   
 
 0.434
AEH23486.1
PFAM: Dissimilatory sulphite reductase D; KEGG: dat:HRM2_42380 DsrD.
  
     0.420
AEH22308.1
NLP/P60 protein; KEGG: tye:THEYE_A1300 probable endopeptidase LytE; PFAM: NLP/P60; Peptidoglycan-binding lysin domain; SMART: Peptidoglycan-binding Lysin subgroup.
  
   
 0.409
Your Current Organism:
Thermodesulfobacterium geofontis
NCBI taxonomy Id: 795359
Other names: T. geofontis OPF15, Thermodesulfobacterium geofontis OPF15, Thermodesulfobacterium sp. OPF15
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