Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Co-expression
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[Homology]
Score
AEH22297.1PFAM: DNA helicase, UvrD/REP type; KEGG: rsd:TGRD_136 RecB-like exodeoxyribonuclease V beta chain. (772 aa)    
Predicted Functional Partners:
AEH22607.1
KEGG: tye:THEYE_A1135 hypothetical protein.
 
     0.802
AEH22298.1
Ribosomal RNA small subunit methyltransferase E; Specifically methylates the N3 position of the uracil ring of uridine 1498 (m3U1498) in 16S rRNA. Acts on the fully assembled 30S ribosomal subunit.
       0.576
AEH23127.1
PFAM: DNA helicase, UvrD/REP type; KEGG: tye:THEYE_A0217 ATP-dependent DNA helicase PcrA.
 
   
 0.539
pheT
TIGRFAM: Phenylalanyl-tRNA synthetase, class IIc, beta subunit, bacterial; HAMAP: Phenylalanyl-tRNA synthetase, class IIc, beta subunit, bacterial; KEGG: chy:CHY_1570 phenylalanyl-tRNA synthetase subunit beta.
     
 0.535
polA
DNA polymerase I; In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity; Belongs to the DNA polymerase type-A family.
     
 0.534
AEH23128.1
PFAM: Oligosaccharyl transferase, STT3 subunit; KEGG: dte:Dester_1378 oligosaccharyl transferase STT3 subunit.
  
     0.531
AEH22300.1
PFAM: Nickel transport complex, NikM subunit, transmembrane; KEGG: tye:THEYE_A1919 hypothetical protein.
 
     0.515
AEH23609.1
KEGG: sfu:Sfum_3774 membrane protein-like.
 
     0.502
AEH23387.1
KEGG: pca:Pcar_3121 hypothetical protein.
  
     0.498
AEH22537.1
DNA polymerase III, alpha subunit; SMART: Polymerase/histidinol phosphatase, N-terminal; TIGRFAM: DNA polymerase III, alpha subunit; KEGG: dte:Dester_1146 DNA polymerase III, alpha subunit; PFAM: Bacterial DNA polymerase III, alpha subunit; PHP, C-terminal; Nucleic acid binding, OB-fold, tRNA/helicase-type.
 
  
 0.487
Your Current Organism:
Thermodesulfobacterium geofontis
NCBI taxonomy Id: 795359
Other names: T. geofontis OPF15, Thermodesulfobacterium geofontis OPF15, Thermodesulfobacterium sp. OPF15
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