STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AEH22300.1PFAM: Nickel transport complex, NikM subunit, transmembrane; KEGG: tye:THEYE_A1919 hypothetical protein. (275 aa)    
Predicted Functional Partners:
AEH23393.1
KEGG: tye:THEYE_A1921 hypothetical protein.
 
  
  0.977
AEH23392.1
KEGG: tye:THEYE_A1922 cobalt ABC transporter, permease protein CbiQ; TIGRFAM: Cobalt ABC transporter CbiQ, permease subunit; PFAM: Cobalt transport protein.
 
  
 0.953
AEH23394.1
PFAM: Cobalamin (vitamin B12) biosynthesis CbiM; KEGG: tye:THEYE_A1920 CbiM.
 
  
  0.953
AEH23391.1
Fe(3+)-transporting ATPase; PFAM: ABC transporter-like; KEGG: tye:THEYE_A1923 cobalt import ATP-binding protein CbiO; SMART: ATPase, AAA+ type, core.
 
  
 0.947
AEH23395.1
PFAM: Nickel transport complex, NikM subunit, transmembrane; KEGG: dte:Dester_1050 nickel transport complex protein, NikM subunit, transmembrane.
  
  
 
0.927
AEH22833.1
KEGG: ppd:Ppro_1247 hypothetical protein.
 
  
  0.926
AEH22299.1
Hypothetical protein.
       0.783
AEH22301.1
PFAM: UspA; KEGG: tye:THEYE_A0762 universal stress protein, putative.
       0.578
AEH22298.1
Ribosomal RNA small subunit methyltransferase E; Specifically methylates the N3 position of the uracil ring of uridine 1498 (m3U1498) in 16S rRNA. Acts on the fully assembled 30S ribosomal subunit.
       0.570
AEH22297.1
PFAM: DNA helicase, UvrD/REP type; KEGG: rsd:TGRD_136 RecB-like exodeoxyribonuclease V beta chain.
 
     0.515
Your Current Organism:
Thermodesulfobacterium geofontis
NCBI taxonomy Id: 795359
Other names: T. geofontis OPF15, Thermodesulfobacterium geofontis OPF15, Thermodesulfobacterium sp. OPF15
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