STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AEH22342.1Transporter, hydrophobe/amphiphile efflux-1 (HAE1) family; KEGG: ant:Arnit_0634 hydrophobe/amphiphile efflux transporter; TIGRFAM: Hydrophobe/amphiphile efflux-1 HAE1; PFAM: Acriflavin resistance protein; Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family. (1044 aa)    
Predicted Functional Partners:
AEH22341.1
KEGG: sku:Sulku_2655 efflux transporter, RND family, MFP subunit; TIGRFAM: Secretion protein HlyD; PFAM: Secretion protein HlyD; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family.
 
 0.999
AEH22343.1
KEGG: sku:Sulku_2653 RND efflux system, outer membrane lipoprotein, NodT family; TIGRFAM: RND efflux system, outer membrane lipoprotein, NodT; PFAM: Outer membrane efflux protein.
 0.997
AEH23162.1
PFAM: Outer membrane efflux protein; KEGG: tye:THEYE_A0119 outer membrane efflux protein.
 
 0.970
AEH22340.1
PFAM: Transcriptional regulator, TetR-like, DNA-binding, bacterial/archaeal; KEGG: tye:THEYE_A0116 transcriptional regulator, TetR family.
     
 0.801
AEH23301.1
Preprotein translocase, YajC subunit; KEGG: dps:DP0909 hypothetical protein; TIGRFAM: YajC; PFAM: YajC.
    
 
 0.653
AEH22339.1
PFAM: AT hook, DNA-binding motif.
       0.516
secF
Protein-export membrane protein SecD; Part of the Sec protein translocase complex. Interacts with the SecYEG preprotein conducting channel. SecDF uses the proton motive force (PMF) to complete protein translocation after the ATP-dependent function of SecA; Belongs to the SecD/SecF family. SecD subfamily.
  
  
 0.489
AEH22542.1
PFAM: Secretion protein HlyD; KEGG: tye:THEYE_A1628 HlyD family secretion protein, putative; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family.
 
   
 0.475
Your Current Organism:
Thermodesulfobacterium geofontis
NCBI taxonomy Id: 795359
Other names: T. geofontis OPF15, Thermodesulfobacterium geofontis OPF15, Thermodesulfobacterium sp. OPF15
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