STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AEH22361.1PFAM: Cytochrome c assembly protein; KEGG: gme:Gmet_3232 cytochrome c assembly protein. (274 aa)    
Predicted Functional Partners:
AEH23221.1
ResB family protein; PFAM: ResB-like; KEGG: dte:Dester_1268 hypothetical protein.
 
  
 0.919
hemA
Glutamyl-tRNA reductase; Catalyzes the NADPH-dependent reduction of glutamyl-tRNA(Glu) to glutamate 1-semialdehyde (GSA).
 
  
 0.892
AEH23535.1
TIGRFAM: Uroporphyrin-III C-methyltransferase, C-terminal; KEGG: dsa:Desal_0251 uroporphyrin-III C-methyltransferase; PFAM: Tetrapyrrole methylase; Tetrapyrrole biosynthesis, uroporphyrinogen III synthase.
  
    0.876
AEH22362.1
PFAM: UspA; KEGG: sfu:Sfum_0646 UspA domain-containing protein.
       0.753
AEH22363.1
KEGG: nth:Nther_0671 radical SAM domain protein; PFAM: Radical SAM; Cobalamin (vitamin B12)-binding; SMART: Elongator protein 3/MiaB/NifB.
       0.586
AEH23530.1
Hypothetical protein; KEGG: cki:Calkr_0802 alkyl hydroperoxide reductase/thiol specific antioxidant/mal allergen.
 
  
 0.554
AEH22364.1
Hypothetical protein; KEGG: sat:SYN_00931 integrin-like repeat-containing protein.
       0.419
Your Current Organism:
Thermodesulfobacterium geofontis
NCBI taxonomy Id: 795359
Other names: T. geofontis OPF15, Thermodesulfobacterium geofontis OPF15, Thermodesulfobacterium sp. OPF15
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