STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AEH22372.1SurA domain protein; PFAM: SurA N-terminal; KEGG: dat:HRM2_28180 PpiD2. (308 aa)    
Predicted Functional Partners:
recO
DNA repair protein recO; Involved in DNA repair and RecF pathway recombination.
 
     0.835
AEH22369.1
PFAM: Peptidyl-prolyl cis-trans isomerase, PpiC-type; KEGG: cni:Calni_0191 ppic-type peptidyl-prolyl cis-trans isomerase.
 
     0.815
AEH22374.1
KEGG: cni:Calni_1857 hypothetical protein; TIGRFAM: Conserved hypothetical protein CHP00730; PFAM: Conserved hypothetical protein CHP00730; Belongs to the LOG family.
       0.814
AEH22371.1
Protease Do; SMART: PDZ/DHR/GLGF; TIGRFAM: Peptidase S1C, Do; KEGG: dpr:Despr_3341 protease Do; PFAM: Peptidase S1/S6, chymotrypsin/Hap; PDZ/DHR/GLGF.
     
 0.783
AEH22370.1
KEGG: mba:Mbar_A1749 hypothetical protein.
       0.779
pyrB
PFAM: Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding; Aspartate/ornithine carbamoyltransferase, Asp/Orn-binding region; TIGRFAM: Aspartate carbamoyltransferase, eukaryotic; HAMAP: Aspartate carbamoyltransferase; KEGG: dth:DICTH_1465 aspartate carbamoyltransferase; Belongs to the aspartate/ornithine carbamoyltransferase superfamily. ATCase family.
       0.779
pyrC
Dihydroorotase, multifunctional complex type; Catalyzes the reversible cyclization of carbamoyl aspartate to dihydroorotate; Belongs to the metallo-dependent hydrolases superfamily. DHOase family. Class I DHOase subfamily.
  
    0.779
AEH22368.1
Hypothetical protein; KEGG: dth:DICTH_1522 glucose-1-phosphate thymidylyltransferase.
       0.763
AEH23651.1
KEGG: dpr:Despr_0576 outer membrane protein assembly complex, YaeT protein; TIGRFAM: Outer membrane assembly protein, YaeT; PFAM: Bacterial surface antigen (D15); Surface antigen variable number.
  
 
 0.646
secF
Protein-export membrane protein SecD; Part of the Sec protein translocase complex. Interacts with the SecYEG preprotein conducting channel. SecDF uses the proton motive force (PMF) to complete protein translocation after the ATP-dependent function of SecA; Belongs to the SecD/SecF family. SecD subfamily.
  
  
 0.530
Your Current Organism:
Thermodesulfobacterium geofontis
NCBI taxonomy Id: 795359
Other names: T. geofontis OPF15, Thermodesulfobacterium geofontis OPF15, Thermodesulfobacterium sp. OPF15
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