STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AEH22394.1Alpha-amylase; KEGG: lip:LI0331 alpha-amylase; PFAM: Glycoside hydrolase, family 57, core. (399 aa)    
Predicted Functional Partners:
AEH22393.1
TIGRFAM: Alpha-glucan phosphorylase; KEGG: cni:Calni_0992 alpha-glucan phosphorylase; PFAM: Glycosyl transferase, family 35.
 
 
 0.989
AEH22395.1
PFAM: Glycosyl transferase, group 1; Starch synthase catalytic region; KEGG: amu:Amuc_1869 glycosyl transferase group 1.
 
    0.948
AEH22396.1
Amylo-alpha-16-glucosidase; PFAM: Amylo-alpha-1,6-glucosidase; KEGG: hor:Hore_08610 glycogen debranching enzyme, putative.
 
  
 0.943
AEH22392.1
Hypothetical protein; KEGG: tme:Tmel_1816 methyl-accepting chemotaxis sensory transducer.
       0.628
AEH22391.1
KEGG: tye:THEYE_A1391 hypothetical protein.
       0.563
ychF
GTP-binding protein YchF; ATPase that binds to both the 70S ribosome and the 50S ribosomal subunit in a nucleotide-independent manner.
       0.533
AEH22398.1
4-hydroxybenzoyl-CoA thioesterase; KEGG: dps:DP1730 hypothetical protein; TIGRFAM: 4-hydroxybenzoyl-CoA thioesterase; PFAM: Thioesterase superfamily.
       0.508
Your Current Organism:
Thermodesulfobacterium geofontis
NCBI taxonomy Id: 795359
Other names: T. geofontis OPF15, Thermodesulfobacterium geofontis OPF15, Thermodesulfobacterium sp. OPF15
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.