STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AEH22407.1PFAM: Membrane protein, aromatic hydrocarbon degradation; KEGG: hth:HTH_1772 long-chain fatty acid transport protein. (417 aa)    
Predicted Functional Partners:
AEH22406.1
KEGG: adg:Adeg_0996 hypothetical protein.
 
     0.771
AEH23134.1
TIGRFAM: putative regulatory domain-containing; KEGG: saf:SULAZ_0617 hypothetical protein.
  
     0.654
AEH22742.1
PFAM: CDP-alcohol phosphatidyltransferase; KEGG: hth:HTH_1631 CDP-alcohol phosphatidyltransferase; Belongs to the CDP-alcohol phosphatidyltransferase class-I family.
  
     0.583
AEH23135.1
Putative circadian clock protein, KaiC; KEGG: saf:SULAZ_0618 ATPase, RecA-superfamily; TIGRFAM: KaiC domain protein, AF_0795 family; PFAM: Circadian clock protein KaiC, central region.
  
     0.541
AEH22408.1
PFAM: Phosphoglucose isomerase (PGI); KEGG: sfu:Sfum_1952 phosphoglucose isomerase; Belongs to the GPI family.
       0.491
AEH22409.1
KEGG: dak:DaAHT2_0346 porphobilinogen synthase; PFAM: Tetrapyrrole biosynthesis, porphobilinogen synthase; Belongs to the ALAD family.
       0.470
rlpA
Rare lipoprotein A; Lytic transglycosylase with a strong preference for naked glycan strands that lack stem peptides.
       0.470
rnc
Ribonuclease 3; Digests double-stranded RNA. Involved in the processing of primary rRNA transcript to yield the immediate precursors to the large and small rRNAs (23S and 16S). Processes some mRNAs, and tRNAs when they are encoded in the rRNA operon. Processes pre-crRNA and tracrRNA of type II CRISPR loci if present in the organism.
       0.470
era
GTP-binding protein Era-like-protein; An essential GTPase that binds both GDP and GTP, with rapid nucleotide exchange. Plays a role in 16S rRNA processing and 30S ribosomal subunit biogenesis and possibly also in cell cycle regulation and energy metabolism.
       0.470
AEH22891.1
PFAM: Glycosyl transferase, family 39; KEGG: hth:HTH_0673 glycosyltransferase, family 39.
  
     0.468
Your Current Organism:
Thermodesulfobacterium geofontis
NCBI taxonomy Id: 795359
Other names: T. geofontis OPF15, Thermodesulfobacterium geofontis OPF15, Thermodesulfobacterium sp. OPF15
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