Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Co-expression
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[Homology]
Score
AEH22407.1PFAM: Membrane protein, aromatic hydrocarbon degradation; KEGG: hth:HTH_1772 long-chain fatty acid transport protein. (417 aa)    
Predicted Functional Partners:
AEH23651.1
KEGG: dpr:Despr_0576 outer membrane protein assembly complex, YaeT protein; TIGRFAM: Outer membrane assembly protein, YaeT; PFAM: Bacterial surface antigen (D15); Surface antigen variable number.
    
 
 0.784
AEH22236.1
TIGRFAM: Outer membrane assembly lipoprotein YfiO; KEGG: dak:DaAHT2_1639 outer membrane assembly lipoprotein YfiO.
    
 
 0.783
AEH22406.1
KEGG: adg:Adeg_0996 hypothetical protein.
 
     0.771
AEH23134.1
TIGRFAM: putative regulatory domain-containing; KEGG: saf:SULAZ_0617 hypothetical protein.
  
     0.654
AEH22742.1
PFAM: CDP-alcohol phosphatidyltransferase; KEGG: hth:HTH_1631 CDP-alcohol phosphatidyltransferase; Belongs to the CDP-alcohol phosphatidyltransferase class-I family.
  
     0.583
AEH23135.1
Putative circadian clock protein, KaiC; KEGG: saf:SULAZ_0618 ATPase, RecA-superfamily; TIGRFAM: KaiC domain protein, AF_0795 family; PFAM: Circadian clock protein KaiC, central region.
  
     0.541
AEH22408.1
PFAM: Phosphoglucose isomerase (PGI); KEGG: sfu:Sfum_1952 phosphoglucose isomerase; Belongs to the GPI family.
       0.491
AEH22409.1
KEGG: dak:DaAHT2_0346 porphobilinogen synthase; PFAM: Tetrapyrrole biosynthesis, porphobilinogen synthase; Belongs to the ALAD family.
       0.470
rlpA
Rare lipoprotein A; Lytic transglycosylase with a strong preference for naked glycan strands that lack stem peptides.
       0.470
rnc
Ribonuclease 3; Digests double-stranded RNA. Involved in the processing of primary rRNA transcript to yield the immediate precursors to the large and small rRNAs (23S and 16S). Processes some mRNAs, and tRNAs when they are encoded in the rRNA operon. Processes pre-crRNA and tracrRNA of type II CRISPR loci if present in the organism.
       0.470
Your Current Organism:
Thermodesulfobacterium geofontis
NCBI taxonomy Id: 795359
Other names: T. geofontis OPF15, Thermodesulfobacterium geofontis OPF15, Thermodesulfobacterium sp. OPF15
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