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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AEH22604.1PFAM: Tetratricopeptide TPR-1; KEGG: mar:MAE_03780 TPR repeat-containing protein. (147 aa)    
Predicted Functional Partners:
AEH22323.1
PFAM: Tetratricopeptide TPR-1; Tetratricopeptide TPR2; KEGG: sat:SYN_01414 TPR repeat-containing protein.
  
     0.748
polA
DNA polymerase I; In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity; Belongs to the DNA polymerase type-A family.
  
    0.545
AEH22603.1
Ribonuclease BN; KEGG: paa:Paes_1471 ribonuclease BN; TIGRFAM: Ribonuclease BN; PFAM: Ribonuclease BN-related.
       0.534
AEH23430.1
PFAM: Tetratricopeptide TPR2; Tetratricopeptide TPR-1; KEGG: sat:SYN_00192 TPR repeat-containing protein.
 
     0.532
AEH23062.1
KEGG: dat:HRM2_46500 hypothetical protein; PFAM: Tetratricopeptide TPR-1; SMART: Tetratricopeptide repeat.
  
     0.479
AEH23143.1
KEGG: rrs:RoseRS_0892 WD-40 repeat-containing protein; PFAM: WD40 repeat, subgroup; SMART: WD40 repeat.
  
     0.445
AEH23593.1
YcaO-domain protein; TIGRFAM: YcaO-like; PFAM: YcaO-like; Tetratricopeptide TPR-1; KEGG: dol:Dole_1241 hypothetical protein; SMART: Tetratricopeptide repeat.
 
     0.417
Your Current Organism:
Thermodesulfobacterium geofontis
NCBI taxonomy Id: 795359
Other names: T. geofontis OPF15, Thermodesulfobacterium geofontis OPF15, Thermodesulfobacterium sp. OPF15
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