STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AEH22653.1KEGG: dal:Dalk_2369 hydroxylamine oxidase. (476 aa)    
Predicted Functional Partners:
AEH22490.1
KEGG: geb:GM18_2729 hypothetical protein.
  
  
 
0.928
AEH23287.1
PFAM: Nitrate reductase, gamma subunit; KEGG: tye:THEYE_A0005 DsrM protein.
     
 0.901
AEH22654.1
Hypothetical protein.
       0.768
AEH22655.1
KEGG: tye:THEYE_A0721 hypothetical protein.
       0.768
AEH22618.1
PFAM: ATP-grasp fold, RimK-type; KEGG: dol:Dole_1115 RimK domain-containing protein ATP-grasp.
  
     0.535
AEH22652.1
KEGG: tye:THEYE_A0904 methyl-accepting chemotaxis protein; PFAM: Chemotaxis methyl-accepting receptor, signalling; HAMP linker domain; SMART: Chemotaxis methyl-accepting receptor, signalling.
  
    0.525
AEH22644.1
Regulatory protein MerR; SMART: HTH transcriptional regulator, MerR; KEGG: gpb:HDN1F_10630 transcriptional regulator, MerR family.
 
     0.439
rpmI
TIGRFAM: Ribosomal protein L35; HAMAP: Ribosomal protein L35; KEGG: tye:THEYE_A1227 50S ribosomal protein L35; PFAM: Ribosomal protein L35; Belongs to the bacterial ribosomal protein bL35 family.
       0.431
panB
3-methyl-2-oxobutanoate hydroxymethyltransferase; Catalyzes the reversible reaction in which hydroxymethyl group from 5,10-methylenetetrahydrofolate is transferred onto alpha- ketoisovalerate to form ketopantoate; Belongs to the PanB family.
       0.431
ruvB
Holliday junction ATP-dependent DNA helicase ruvB; The RuvA-RuvB complex in the presence of ATP renatures cruciform structure in supercoiled DNA with palindromic sequence, indicating that it may promote strand exchange reactions in homologous recombination. RuvAB is a helicase that mediates the Holliday junction migration by localized denaturation and reannealing.
       0.431
Your Current Organism:
Thermodesulfobacterium geofontis
NCBI taxonomy Id: 795359
Other names: T. geofontis OPF15, Thermodesulfobacterium geofontis OPF15, Thermodesulfobacterium sp. OPF15
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