STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AEH22667.1Hypothetical protein; KEGG: sfu:Sfum_0537 type IV pilus assembly protein PilM. (351 aa)    
Predicted Functional Partners:
AEH23296.1
Hypothetical protein; KEGG: dpr:Despr_3220 fimbrial assembly family protein.
  
 
 0.953
AEH23297.1
KEGG: dpr:Despr_3219 fimbrial assembly protein PilO.
 
 
 0.871
AEH23299.1
PFAM: Type II/III secretion system; NolW-like; Secretin/TonB, short N-terminal; KEGG: lpa:lpa_01404 type IV pilus assembly protein PilQ.
 
 
 0.870
AEH22670.1
PFAM: HAMP linker domain; KEGG: tye:THEYE_A0904 methyl-accepting chemotaxis protein.
     
 0.748
AEH22669.1
Hypothetical protein; KEGG: cow:Calow_1934 dynamin family protein.
       0.738
AEH22668.1
Hypothetical protein.
       0.732
AEH22671.1
Hemerythrin-like metal-binding protein; KEGG: ddf:DEFDS_P063 methyl-accepting chemotaxis protein; TIGRFAM: Haemerythrin-like, metal-binding; PFAM: Haemerythrin/HHE cation-binding motif.
       0.684
AEH22127.1
Prepilin peptidase; Cleaves type-4 fimbrial leader sequence and methylates the N- terminal (generally Phe) residue.
 
  
 0.576
AEH22937.1
PFAM: Type II secretion system F domain; KEGG: gbm:Gbem_2593 type IV pilus biogenesis protein PilC.
 
 
 
 0.528
AEH22516.1
PFAM: Outer membrane chaperone Skp (OmpH); KEGG: tye:THEYE_A0093 outer membrane protein, putative.
  
     0.516
Your Current Organism:
Thermodesulfobacterium geofontis
NCBI taxonomy Id: 795359
Other names: T. geofontis OPF15, Thermodesulfobacterium geofontis OPF15, Thermodesulfobacterium sp. OPF15
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