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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AEH22702.1PFAM: Bacterial alpha-L-rhamnosidase; KEGG: nde:NIDE3191 putative amylo-alpha-1,6-glucosidase. (707 aa)    
Predicted Functional Partners:
AEH22701.1
PFAM: Glycosyl transferase, group 1; KEGG: nwa:Nwat_1578 glycosyl transferase group 1.
 
   0.960
AEH22393.1
TIGRFAM: Alpha-glucan phosphorylase; KEGG: cni:Calni_0992 alpha-glucan phosphorylase; PFAM: Glycosyl transferase, family 35.
  
 
 0.716
gatA
Glutamyl-tRNA(Gln) amidotransferase subunit A; Allows the formation of correctly charged Gln-tRNA(Gln) through the transamidation of misacylated Glu-tRNA(Gln) in organisms which lack glutaminyl-tRNA synthetase. The reaction takes place in the presence of glutamine and ATP through an activated gamma-phospho-Glu- tRNA(Gln).
       0.511
AEH22700.1
TIGRFAM: ParB-like partition protein; PFAM: ParB-like nuclease; KorB; KEGG: tye:THEYE_A1991 stage 0 sporulation protein J; SMART: ParB-like nuclease; Belongs to the ParB family.
       0.511
AEH22693.1
Hypothetical protein; KEGG: slp:Slip_2381 single-stranded nucleic acid binding R3H domain protein.
       0.484
mnmE
tRNA modification GTPase mnmE; Exhibits a very high intrinsic GTPase hydrolysis rate. Involved in the addition of a carboxymethylaminomethyl (cmnm) group at the wobble position (U34) of certain tRNAs, forming tRNA- cmnm(5)s(2)U34; Belongs to the TRAFAC class TrmE-Era-EngA-EngB-Septin-like GTPase superfamily. TrmE GTPase family.
       0.484
AEH22695.1
KEGG: tam:Theam_0093 5-oxoprolinase (ATP-hydrolyzing); PFAM: Hydantoinase/oxoprolinase; Hydantoinaseoxoprolinase, N-terminal.
       0.484
AEH22696.1
5-oxoprolinase (ATP-hydrolyzing); KEGG: aae:aq_1925 N-methylhydantoinase B; PFAM: Hydantoinase B/oxoprolinase.
       0.484
AEH22697.1
KEGG: aae:aq_1960 HMP-P kinase; PFAM: Phosphomethylpyrimidine kinase type-1.
       0.484
gatC
Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit C; Allows the formation of correctly charged Asn-tRNA(Asn) or Gln-tRNA(Gln) through the transamidation of misacylated Asp-tRNA(Asn) or Glu-tRNA(Gln) in organisms which lack either or both of asparaginyl- tRNA or glutaminyl-tRNA synthetases. The reaction takes place in the presence of glutamine and ATP through an activated phospho-Asp- tRNA(Asn) or phospho-Glu-tRNA(Gln); Belongs to the GatC family.
       0.484
Your Current Organism:
Thermodesulfobacterium geofontis
NCBI taxonomy Id: 795359
Other names: T. geofontis OPF15, Thermodesulfobacterium geofontis OPF15, Thermodesulfobacterium sp. OPF15
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