STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AEH22754.1KEGG: dak:DaAHT2_1673 heat repeat-containing PBS lyase. (351 aa)    
Predicted Functional Partners:
AEH22753.1
Tetratricopeptide TPR_1 repeat-containing protein; PFAM: Tetratricopeptide TPR-1; Tetratricopeptide TPR2; KEGG: saf:SULAZ_1707 tetratricopeptide TPR_2 repeat protein.
     0.940
AEH22755.1
KEGG: dps:DP1095 hypothetical protein; PFAM: Tetratricopeptide TPR2; Tetratricopeptide TPR-1; SMART: Tetratricopeptide repeat.
 
     0.839
AEH23435.1
KEGG: dpr:Despr_0597 hypothetical protein.
  
     0.772
AEH22551.1
PFAM: ATP-grasp fold, RimK-type; KEGG: dak:DaAHT2_2417 RimK domain protein ATP-grasp.
  
     0.759
AEH22347.1
KEGG: dak:DaAHT2_2214 hypothetical protein.
  
     0.747
AEH22681.1
PFAM: Protein of unknown function DUF395, YeeE/YedE; KEGG: dpr:Despr_3284 hypothetical protein.
  
     0.691
efp
Elongation factor P; Involved in peptide bond synthesis. Stimulates efficient translation and peptide-bond synthesis on native or reconstituted 70S ribosomes in vitro. Probably functions indirectly by altering the affinity of the ribosome for aminoacyl-tRNA, thus increasing their reactivity as acceptors for peptidyl transferase.
  
 0.680
AEH23512.1
KEGG: dbr:Deba_1413 hypothetical protein.
  
     0.676
AEH22184.1
Hypothetical protein; KEGG: pmx:PERMA_0605 putative peptidase M1, membrane alanine aminopeptidase.
  
     0.666
AEH22559.1
KEGG: dpr:Despr_1071 heat shock protein DnaJ domain-containing protein; PFAM: Heat shock protein DnaJ, N-terminal; SMART: Heat shock protein DnaJ, N-terminal.
  
     0.666
Your Current Organism:
Thermodesulfobacterium geofontis
NCBI taxonomy Id: 795359
Other names: T. geofontis OPF15, Thermodesulfobacterium geofontis OPF15, Thermodesulfobacterium sp. OPF15
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