Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
AEH22787.1Primosome, DnaD subunit; TIGRFAM: DnaD/phage-associated region; PFAM: Cell divisionFtsK/SpoIIIE; DNA translocase ftsK gamma; KEGG: sat:SYN_01274 cell division protein; SMART: ATPase, AAA+ type, core. (670 aa)    
Predicted Functional Partners:
AEH22786.1
PFAM: Outer membrane lipoprotein carrier protein LolA; KEGG: sat:SYN_00884 outer membrane lipoprotein carrier protein.
  
  
 0.840
AEH23043.1
Polypeptide-transport-associated domain protein FtsQ-type; Essential cell division protein.
   
 
 0.659
polA
DNA polymerase I; In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity; Belongs to the DNA polymerase type-A family.
 
  
 0.632
AEH23620.1
KEGG: sep:SE1274 ComEC late competence protein 3; TIGRFAM: Competence protein ComEC/Rec2; ComEC/Rec2-related protein; PFAM: ComEC/Rec2-related protein.
 
  
 0.629
AEH22700.1
TIGRFAM: ParB-like partition protein; PFAM: ParB-like nuclease; KorB; KEGG: tye:THEYE_A1991 stage 0 sporulation protein J; SMART: ParB-like nuclease; Belongs to the ParB family.
  
   
 0.623
ribBA
GTP cyclohydrolase-2; Catalyzes the conversion of D-ribulose 5-phosphate to formate and 3,4-dihydroxy-2-butanone 4-phosphate; In the C-terminal section; belongs to the GTP cyclohydrolase II family.
  
  
 0.547
xerC-2
Tyrosine recombinase xerC; Site-specific tyrosine recombinase, which acts by catalyzing the cutting and rejoining of the recombining DNA molecules. The XerC- XerD complex is essential to convert dimers of the bacterial chromosome into monomers to permit their segregation at cell division. It also contributes to the segregational stability of plasmids.
  
   
 0.511
AEH22337.1
PFAM: Cobyrinic acid a,c-diamide synthase; KEGG: fjo:Fjoh_0202 cobyrinic acid a,c-diamide synthase.
  
  
 0.493
AEH22308.1
NLP/P60 protein; KEGG: tye:THEYE_A1300 probable endopeptidase LytE; PFAM: NLP/P60; Peptidoglycan-binding lysin domain; SMART: Peptidoglycan-binding Lysin subgroup.
  
  
 0.479
xerC
Tyrosine recombinase xerC; Site-specific tyrosine recombinase, which acts by catalyzing the cutting and rejoining of the recombining DNA molecules. The XerC- XerD complex is essential to convert dimers of the bacterial chromosome into monomers to permit their segregation at cell division. It also contributes to the segregational stability of plasmids.
  
   
 0.470
Your Current Organism:
Thermodesulfobacterium geofontis
NCBI taxonomy Id: 795359
Other names: T. geofontis OPF15, Thermodesulfobacterium geofontis OPF15, Thermodesulfobacterium sp. OPF15
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