Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
AEH22789.1KEGG: pca:Pcar_1176 hypothetical protein; TIGRFAM: Outer membrane autotransporter barrel; PFAM: Autotransporter beta-domain. (1210 aa)    
Predicted Functional Partners:
AEH22788.1
KEGG: dau:Daud_1896 hypothetical protein.
       0.773
AEH22787.1
Primosome, DnaD subunit; TIGRFAM: DnaD/phage-associated region; PFAM: Cell divisionFtsK/SpoIIIE; DNA translocase ftsK gamma; KEGG: sat:SYN_01274 cell division protein; SMART: ATPase, AAA+ type, core.
  
    0.467
AEH22786.1
PFAM: Outer membrane lipoprotein carrier protein LolA; KEGG: sat:SYN_00884 outer membrane lipoprotein carrier protein.
       0.460
thrS
KEGG: tye:THEYE_A1229 threonyl-tRNA synthetase; TIGRFAM: Threonyl-tRNA synthetase, class IIa; PFAM: Aminoacyl-tRNA synthetase, class II (G/ H/ P/ S), conserved region; Threonyl/alanyl tRNA synthetase, SAD; Anticodon-binding; Belongs to the class-II aminoacyl-tRNA synthetase family.
       0.418
ribBA
GTP cyclohydrolase-2; Catalyzes the conversion of D-ribulose 5-phosphate to formate and 3,4-dihydroxy-2-butanone 4-phosphate; In the C-terminal section; belongs to the GTP cyclohydrolase II family.
     
 0.401
Your Current Organism:
Thermodesulfobacterium geofontis
NCBI taxonomy Id: 795359
Other names: T. geofontis OPF15, Thermodesulfobacterium geofontis OPF15, Thermodesulfobacterium sp. OPF15
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