STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AEH22829.1PFAM: TonB-dependent receptor, beta-barrel; TonB-dependent receptor, plug; KEGG: alv:Alvin_1672 TonB-dependent receptor. (762 aa)    
Predicted Functional Partners:
AEH22951.1
KEGG: hth:HTH_0241 TonB family protein; TIGRFAM: TonB, C-terminal; PFAM: Gram-negative bacterial tonB protein.
 
 
 0.976
AEH22782.1
KEGG: dsa:Desal_2479 protein TolA.
  
 
 0.869
AEH22830.1
PFAM: Tetrapyrrole methylase; KEGG: ppd:Ppro_1250 uroporphyrin-III C/tetrapyrrole methyltransferase.
 
     0.790
AEH22831.1
PFAM: Amino acid permease-associated region; KEGG: ppd:Ppro_1252 amino acid permease-associated region.
 
     0.773
AEH22832.1
KEGG: oan:Oant_4175 hypothetical protein.
 
    0.765
AEH22833.1
KEGG: ppd:Ppro_1247 hypothetical protein.
  
    0.652
AEH22828.1
PFAM: Outer membrane lipoprotein Slp; KEGG: tye:THEYE_A2084 outer membrane lipoprotein Slp family.
       0.482
AEH22950.1
PFAM: Biopolymer transport protein ExbD/TolR; KEGG: hth:HTH_1677 biopolymer transport protein.
 
  
 0.477
AEH22781.1
PFAM: Biopolymer transport protein ExbD/TolR; KEGG: dpr:Despr_2187 cell division and transport-associated protein TolR.
  
  
 0.406
Your Current Organism:
Thermodesulfobacterium geofontis
NCBI taxonomy Id: 795359
Other names: T. geofontis OPF15, Thermodesulfobacterium geofontis OPF15, Thermodesulfobacterium sp. OPF15
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.