STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AEH22906.1KEGG: sul:SYO3AOP1_1425 hypothetical protein. (598 aa)    
Predicted Functional Partners:
AEH23491.1
PFAM: RNA-metabolising metallo-beta-lactamase; KEGG: saf:SULAZ_1595 metallo-beta-lactamase family protein.
    
 0.845
alaS
alanyl-tRNA synthetase; Catalyzes the attachment of alanine to tRNA(Ala) in a two- step reaction: alanine is first activated by ATP to form Ala-AMP and then transferred to the acceptor end of tRNA(Ala). Also edits incorrectly charged Ser-tRNA(Ala) and Gly-tRNA(Ala) via its editing domain.
   
 0.787
AEH22905.1
KEGG: sul:SYO3AOP1_1426 hypothetical protein.
       0.768
AEH22413.1
KEGG: ddf:DEFDS_2147 negative regulator of flagellin synthesis FlgM; TIGRFAM: flagellar biosynthesis anti-sigma factor protein FlgM; PFAM: Anti-sigma-28 factor, FlgM.
  
 
 0.717
AEH22903.1
KEGG: sul:SYO3AOP1_1428 hypothetical protein.
       0.656
AEH22904.1
KEGG: sul:SYO3AOP1_1427 hypothetical protein.
       0.656
AEH22541.1
PFAM: Histone deacetylase superfamily; KEGG: sat:SYN_00740 histone deacetylase family protein.
    
 0.575
AEH22907.1
KEGG: sul:SYO3AOP1_1424 hypothetical protein.
       0.572
AEH23643.1
KEGG: dak:DaAHT2_2345 flagellar hook-associated protein FlgK; TIGRFAM: Flagellar hook-associated protein, FlgK; PFAM: Protein of unknown function DUF1078, C-terminal.
  
  
 0.551
AEH22753.1
Tetratricopeptide TPR_1 repeat-containing protein; PFAM: Tetratricopeptide TPR-1; Tetratricopeptide TPR2; KEGG: saf:SULAZ_1707 tetratricopeptide TPR_2 repeat protein.
   
 0.540
Your Current Organism:
Thermodesulfobacterium geofontis
NCBI taxonomy Id: 795359
Other names: T. geofontis OPF15, Thermodesulfobacterium geofontis OPF15, Thermodesulfobacterium sp. OPF15
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