STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
xerCTyrosine recombinase xerC; Site-specific tyrosine recombinase, which acts by catalyzing the cutting and rejoining of the recombining DNA molecules. The XerC- XerD complex is essential to convert dimers of the bacterial chromosome into monomers to permit their segregation at cell division. It also contributes to the segregational stability of plasmids. (292 aa)    
Predicted Functional Partners:
AEH22928.1
PFAM: Radical SAM; KEGG: tye:THEYE_A0358 radical SAM domain protein.
       0.807
AEH22930.1
Hypothetical protein.
       0.807
AEH22932.1
PFAM: Polynucleotide adenylyltransferase region; KEGG: dtu:Dtur_1497 CBS domain containing protein; Belongs to the tRNA nucleotidyltransferase/poly(A) polymerase family.
       0.801
AEH22926.1
KEGG: drt:Dret_2009 metal dependent phosphohydrolase; PFAM: Metal-dependent phosphohydrolase, HD region, subdomain; SMART: Metal-dependent phosphohydrolase, HD region.
       0.779
AEH22927.1
Protein of unknown function DUF224 cysteine-rich region domain protein; PFAM: Cysteine-rich region, CCG; KEGG: tye:THEYE_A0169 anaerobic glycerol-3-phosphate dehydrogenase, subunit C, putative.
       0.779
AEH22924.1
S-adenosylmethionine decarboxylase proenzyme; Catalyzes the decarboxylation of S-adenosylmethionine to S- adenosylmethioninamine (dcAdoMet), the propylamine donor required for the synthesis of the polyamines spermine and spermidine from the diamine putrescine.
       0.778
AEH22925.1
Agmatinase; TIGRFAM: Putative agmatinase; KEGG: dth:DICTH_1308 agmatinase, putative; PFAM: Ureohydrolase; Belongs to the arginase family.
       0.778
AEH22929.1
PFAM: Metallophosphoesterase; KEGG: dol:Dole_0345 metallophosphoesterase.
       0.773
AEH22935.1
KEGG: ddf:DEFDS_1930 phosphatase Ppx/GppA family; PFAM: Ppx/GppA phosphatase; Histone-like bacterial DNA-binding protein; SMART: Histone-like bacterial DNA-binding protein.
  
  
 0.663
AEH22933.1
PFAM: Ribosomal protein S1, RNA binding domain; KEGG: tth:TTC1824 30S ribosomal protein S1.
     
 0.641
Your Current Organism:
Thermodesulfobacterium geofontis
NCBI taxonomy Id: 795359
Other names: T. geofontis OPF15, Thermodesulfobacterium geofontis OPF15, Thermodesulfobacterium sp. OPF15
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