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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AEH22945.1KEGG: she:Shewmr4_0422 methylation site containing protein. (129 aa)    
Predicted Functional Partners:
AEH22125.1
KEGG: hya:HY04AAS1_0156 hypothetical protein.
  
  
 0.693
AEH22126.1
KEGG: hya:HY04AAS1_0155 hypothetical protein.
  
  
 0.687
AEH22969.1
KEGG: pmx:PERMA_1111 transglutaminase domain protein; PFAM: Transglutaminase-like; SMART: Transglutaminase-like.
  
     0.634
AEH22968.1
Protein of unknown function DUF58; KEGG: saf:SULAZ_0020 hypothetical protein; manually curated; PFAM: Protein of unknown function DUF58.
  
     0.602
AEH23299.1
PFAM: Type II/III secretion system; NolW-like; Secretin/TonB, short N-terminal; KEGG: lpa:lpa_01404 type IV pilus assembly protein PilQ.
 
   
 0.573
AEH22123.1
Pilin; KEGG: aae:aq_1434 pilin.
 
  
 0.484
AEH22946.1
KEGG: nis:NIS_0655 hypothetical protein.
       0.477
AEH22838.1
PFAM: Disulphide bond isomerase, DsbC/G, N-terminal; Glutaredoxin; KEGG: hth:HTH_1351 thiol:disulfide interchange protein.
  
     0.417
AEH23297.1
KEGG: dpr:Despr_3219 fimbrial assembly protein PilO.
 
   
 0.416
Your Current Organism:
Thermodesulfobacterium geofontis
NCBI taxonomy Id: 795359
Other names: T. geofontis OPF15, Thermodesulfobacterium geofontis OPF15, Thermodesulfobacterium sp. OPF15
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