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STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AEH22984.1TIGRFAM: [Ni-Fe]-hydrogenase, small subunit; Twin-arginine translocation pathway, signal sequence; KEGG: dte:Dester_0453 hydrogenase (NiFe) small subunit HydA; PFAM: NADH:ubiquinone oxidoreductase-like, 20kDa subunit. (305 aa)    
Predicted Functional Partners:
AEH22983.1
KEGG: dte:Dester_0454 cytochrome-c3 hydrogenase; PFAM: Nickel-dependent hydrogenase, large subunit.
 
 
 0.999
AEH22569.1
Hydrogenase expression/formation protein; KEGG: aae:aq_667 HupD hydrogenase related function; TIGRFAM: Peptidase A31, hydrogenase expression/formation protein; Peptidase A31, hydrogen uptake protein; PFAM: Peptidase A31, hydrogen uptake protein.
 
  
 0.872
AEH23291.1
PFAM: Polysulphide reductase, NrfD; KEGG: sfu:Sfum_1150 polysulfide reductase, NrfD.
  
  
 0.539
AEH23567.1
PFAM: Polysulphide reductase, NrfD; KEGG: tye:THEYE_A1280 polysulphide reductase, NrfD superfamily.
  
  
 0.539
hypA
Hydrogenase expression/synthesis HypA; Involved in the maturation of [NiFe] hydrogenases. Required for nickel insertion into the metal center of the hydrogenase.
 
  
 0.523
AEH22640.1
PFAM: Rubredoxin-type Fe(Cys)4 protein; KEGG: pmo:Pmob_1630 rubredoxin-type Fe(Cys)4 protein.
  
 
 0.489
AEH22641.1
PFAM: Rubredoxin-type Fe(Cys)4 protein; KEGG: tna:CTN_1927 rubredoxin-type Fe(Cys)4 protein.
  
 
 0.489
AEH22642.1
PFAM: Rubredoxin-type Fe(Cys)4 protein; KEGG: tye:THEYE_A1651 rubredoxin.
  
 
 0.489
AEH22567.1
KEGG: hth:HTH_1006 hydrogenase expression/formation protein; TIGRFAM: Hydrogenase expression/formation protein HypE; PFAM: AIR synthase related protein, C-terminal; AIR synthase related protein.
 
   
 0.472
AEH22985.1
KEGG: iag:Igag_1482 aldehyde ferredoxin oxidoreductase; PFAM: Aldehyde ferredoxin oxidoreductase, N-terminal; Aldehyde ferredoxin oxidoreductase, C-terminal; SMART: Aldehyde ferredoxin oxidoreductase, N-terminal.
       0.470
Your Current Organism:
Thermodesulfobacterium geofontis
NCBI taxonomy Id: 795359
Other names: T. geofontis OPF15, Thermodesulfobacterium geofontis OPF15, Thermodesulfobacterium sp. OPF15
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