STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AEH23006.1PFAM: Curlin associated; KEGG: svo:SVI_2693 hypothetical protein. (157 aa)    
Predicted Functional Partners:
AEH23007.1
PFAM: Curlin associated; KEGG: fba:FIC_01314 hypothetical protein.
       0.605
AEH23008.1
Hypothetical protein.
       0.597
AEH23009.1
PFAM: Curli assembly protein CsgE; KEGG: ilo:IL0158 curli production assembly/transport component, CsgE.
       0.597
AEH23010.1
PFAM: Curli production assembly/transport component CsgF; KEGG: fjo:Fjoh_2350 hypothetical protein.
       0.581
AEH23011.1
PFAM: Curli production assembly/transport component CsgG; KEGG: fjo:Fjoh_2351 curli production assembly/transport component CsgG.
       0.525
AEH23005.1
KEGG: geo:Geob_2600 transcriptional regulator, LuxR family; PFAM: Transcription regulator LuxR, C-terminal; SMART: Transcription regulator LuxR, C-terminal.
       0.480
Your Current Organism:
Thermodesulfobacterium geofontis
NCBI taxonomy Id: 795359
Other names: T. geofontis OPF15, Thermodesulfobacterium geofontis OPF15, Thermodesulfobacterium sp. OPF15
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