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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AEH23013.1PFAM: Type II secretion system protein E; General secretory system II, protein E, N-terminal; KEGG: pmx:PERMA_0977 type IV pilus assembly protein TapB. (546 aa)    
Predicted Functional Partners:
AEH23014.1
PFAM: Type II secretion system F domain; KEGG: pmx:PERMA_0978 putative type II secretion system protein.
 
 
 0.989
AEH22937.1
PFAM: Type II secretion system F domain; KEGG: gbm:Gbem_2593 type IV pilus biogenesis protein PilC.
 
 
 0.945
AEH22127.1
Prepilin peptidase; Cleaves type-4 fimbrial leader sequence and methylates the N- terminal (generally Phe) residue.
 
 
 0.835
AEH23020.1
PFAM: Type II/III secretion system; KEGG: pmx:PERMA_0972 putative pilus; Belongs to the bacterial secretin family.
 
  
 0.807
AEH23015.1
Hypothetical protein.
       0.773
AEH23017.1
Hypothetical protein.
       0.762
AEH23016.1
SMART: ATPase, AAA+ type, core; KEGG: pmx:PERMA_0968 peptidoglycan-binding domain 1 protein.
     
 0.744
AEH23018.1
Hypothetical protein.
       0.727
AEH23019.1
Hypothetical protein.
       0.707
AEH23299.1
PFAM: Type II/III secretion system; NolW-like; Secretin/TonB, short N-terminal; KEGG: lpa:lpa_01404 type IV pilus assembly protein PilQ.
 
 
 
 0.661
Your Current Organism:
Thermodesulfobacterium geofontis
NCBI taxonomy Id: 795359
Other names: T. geofontis OPF15, Thermodesulfobacterium geofontis OPF15, Thermodesulfobacterium sp. OPF15
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