STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AEH23014.1PFAM: Type II secretion system F domain; KEGG: pmx:PERMA_0978 putative type II secretion system protein. (401 aa)    
Predicted Functional Partners:
AEH23013.1
PFAM: Type II secretion system protein E; General secretory system II, protein E, N-terminal; KEGG: pmx:PERMA_0977 type IV pilus assembly protein TapB.
 
 
 0.986
AEH23489.1
KEGG: sat:SYN_01404 general secretion pathway protein E; PFAM: Type II secretion system protein E; SMART: ATPase, AAA+ type, core.
 
 
 0.933
AEH22127.1
Prepilin peptidase; Cleaves type-4 fimbrial leader sequence and methylates the N- terminal (generally Phe) residue.
 
  
 0.850
AEH23020.1
PFAM: Type II/III secretion system; KEGG: pmx:PERMA_0972 putative pilus; Belongs to the bacterial secretin family.
 
  
 0.833
AEH23590.1
Twitching motility protein; TIGRFAM: Pilus retraction protein PilT; PFAM: Type II secretion system protein E; KEGG: sat:SYN_00126 pili retraction protein; SMART: ATPase, AAA+ type, core.
 
  
 0.791
AEH23591.1
Twitching motility protein; TIGRFAM: Pilus retraction protein PilT; PFAM: Type II secretion system protein E; KEGG: dat:HRM2_04990 PilT1; SMART: ATPase, AAA+ type, core.
 
  
 0.791
AEH23015.1
Hypothetical protein.
       0.773
AEH23017.1
Hypothetical protein.
       0.747
AEH23016.1
SMART: ATPase, AAA+ type, core; KEGG: pmx:PERMA_0968 peptidoglycan-binding domain 1 protein.
  
    0.740
AEH23018.1
Hypothetical protein.
       0.727
Your Current Organism:
Thermodesulfobacterium geofontis
NCBI taxonomy Id: 795359
Other names: T. geofontis OPF15, Thermodesulfobacterium geofontis OPF15, Thermodesulfobacterium sp. OPF15
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