STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AEH23016.1SMART: ATPase, AAA+ type, core; KEGG: pmx:PERMA_0968 peptidoglycan-binding domain 1 protein. (304 aa)    
Predicted Functional Partners:
AEH23017.1
Hypothetical protein.
       0.792
AEH23018.1
Hypothetical protein.
       0.773
AEH23020.1
PFAM: Type II/III secretion system; KEGG: pmx:PERMA_0972 putative pilus; Belongs to the bacterial secretin family.
 
  
 0.767
AEH23019.1
Hypothetical protein.
       0.752
AEH23013.1
PFAM: Type II secretion system protein E; General secretory system II, protein E, N-terminal; KEGG: pmx:PERMA_0977 type IV pilus assembly protein TapB.
     
 0.744
AEH23014.1
PFAM: Type II secretion system F domain; KEGG: pmx:PERMA_0978 putative type II secretion system protein.
  
    0.740
AEH23015.1
Hypothetical protein.
       0.727
AEH23021.1
KEGG: pmx:PERMA_0971 tetratricopeptide repeat domain protein; PFAM: Tetratricopeptide TPR2; SMART: Tetratricopeptide repeat.
       0.561
AEH23297.1
KEGG: dpr:Despr_3219 fimbrial assembly protein PilO.
 
     0.527
thi4
Thiazole biosynthetic enzyme; Involved in the biosynthesis of the thiazole moiety of thiamine. Catalyzes the conversion of NAD and glycine to adenosine diphosphate 5-(2-hydroxyethyl)-4-methylthiazole-2-carboxylate (ADT), an adenylated thiazole intermediate, using free sulfide as a source of sulfur.
       0.502
Your Current Organism:
Thermodesulfobacterium geofontis
NCBI taxonomy Id: 795359
Other names: T. geofontis OPF15, Thermodesulfobacterium geofontis OPF15, Thermodesulfobacterium sp. OPF15
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.