Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
AEH23023.1KEGG: dte:Dester_1442 N-methylation domain-containing protein. (190 aa)    
Predicted Functional Partners:
AEH23022.1
Hypothetical protein; KEGG: tye:THEYE_A1502 putative hemagglutinin-related protein.
 
     0.938
AEH23024.1
UDP-N-acetylmuramate--L-alanine ligase; KEGG: dps:DP2930 UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso- diamino pimelate ligase; PFAM: Mur ligase, central; Mur ligase, N-terminal; Mur ligase, C-terminal.
       0.718
AEH23025.1
PFAM: Protein of unknown function DUF62; KEGG: gvi:glr2922 hypothetical protein.
       0.718
AEH23026.1
KEGG: dth:DICTH_1386 tRNA methyl transferase.
       0.718
AEH23027.1
Sigma 54 interacting domain protein; May be involved in recombinational repair of damaged DNA.
       0.718
AEH23014.1
PFAM: Type II secretion system F domain; KEGG: pmx:PERMA_0978 putative type II secretion system protein.
 
  
 0.675
AEH23020.1
PFAM: Type II/III secretion system; KEGG: pmx:PERMA_0972 putative pilus; Belongs to the bacterial secretin family.
 
  
 0.664
AEH23013.1
PFAM: Type II secretion system protein E; General secretory system II, protein E, N-terminal; KEGG: pmx:PERMA_0977 type IV pilus assembly protein TapB.
 
 
 0.663
AEH23620.1
KEGG: sep:SE1274 ComEC late competence protein 3; TIGRFAM: Competence protein ComEC/Rec2; ComEC/Rec2-related protein; PFAM: ComEC/Rec2-related protein.
  
  
 0.624
AEH23489.1
KEGG: sat:SYN_01404 general secretion pathway protein E; PFAM: Type II secretion system protein E; SMART: ATPase, AAA+ type, core.
  
 
 0.617
Your Current Organism:
Thermodesulfobacterium geofontis
NCBI taxonomy Id: 795359
Other names: T. geofontis OPF15, Thermodesulfobacterium geofontis OPF15, Thermodesulfobacterium sp. OPF15
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