Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
AEH23062.1KEGG: dat:HRM2_46500 hypothetical protein; PFAM: Tetratricopeptide TPR-1; SMART: Tetratricopeptide repeat. (445 aa)    
Predicted Functional Partners:
AEH23061.1
PFAM: Glutaredoxin; KEGG: apo:Arcpr_1659 hypothetical protein.
 
     0.846
AEH23063.1
KEGG: dap:Dacet_0679 radical SAM domain protein; PFAM: Radical SAM; Cobalamin (vitamin B12)-binding; SMART: Elongator protein 3/MiaB/NifB.
 
     0.837
AEH23430.1
PFAM: Tetratricopeptide TPR2; Tetratricopeptide TPR-1; KEGG: sat:SYN_00192 TPR repeat-containing protein.
 
 
 0.723
AEH23601.1
KEGG: dak:DaAHT2_0589 protein of unknown function DUF181; TIGRFAM: YcaO-like; PFAM: YcaO-like.
  
     0.660
AEH22541.1
PFAM: Histone deacetylase superfamily; KEGG: sat:SYN_00740 histone deacetylase family protein.
  
 
  0.632
dnaK
Chaperone protein dnaK; Acts as a chaperone; Belongs to the heat shock protein 70 family.
  
 0.531
rpoA
DNA-directed RNA polymerase subunit alpha; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
    
  0.527
AEH23059.1
TIGRFAM: Methyltransferase FkbM; KEGG: bhy:BHWA1_02264 methyltransferase.
  
    0.527
AEH23058.1
PFAM: Glycosyl transferase, family 2; KEGG: mma:MM_0652 glycosyltransferase.
       0.524
AEH23060.1
Hypothetical protein.
       0.524
Your Current Organism:
Thermodesulfobacterium geofontis
NCBI taxonomy Id: 795359
Other names: T. geofontis OPF15, Thermodesulfobacterium geofontis OPF15, Thermodesulfobacterium sp. OPF15
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