Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
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Co-occurrence
Co-expression
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[Homology]
Score
AEH23063.1KEGG: dap:Dacet_0679 radical SAM domain protein; PFAM: Radical SAM; Cobalamin (vitamin B12)-binding; SMART: Elongator protein 3/MiaB/NifB. (426 aa)    
Predicted Functional Partners:
AEH23062.1
KEGG: dat:HRM2_46500 hypothetical protein; PFAM: Tetratricopeptide TPR-1; SMART: Tetratricopeptide repeat.
 
     0.837
AEH23061.1
PFAM: Glutaredoxin; KEGG: apo:Arcpr_1659 hypothetical protein.
       0.773
AEH23058.1
PFAM: Glycosyl transferase, family 2; KEGG: mma:MM_0652 glycosyltransferase.
       0.524
AEH23059.1
TIGRFAM: Methyltransferase FkbM; KEGG: bhy:BHWA1_02264 methyltransferase.
       0.524
AEH23060.1
Hypothetical protein.
       0.524
Your Current Organism:
Thermodesulfobacterium geofontis
NCBI taxonomy Id: 795359
Other names: T. geofontis OPF15, Thermodesulfobacterium geofontis OPF15, Thermodesulfobacterium sp. OPF15
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