STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
AEH23071.1Hypothetical protein; KEGG: pfo:Pfl01_2836 glycosyl transferase family protein. (512 aa)    
Predicted Functional Partners:
rtcA
RNA 3'-phosphate cyclase; Catalyzes the conversion of 3'-phosphate to a 2',3'-cyclic phosphodiester at the end of RNA. The mechanism of action of the enzyme occurs in 3 steps: (A) adenylation of the enzyme by ATP; (B) transfer of adenylate to an RNA-N3'P to produce RNA-N3'PP5'A; (C) and attack of the adjacent 2'-hydroxyl on the 3'-phosphorus in the diester linkage to produce the cyclic end product. The biological role of this enzyme is unknown but it is likely to function in some aspects of cellular RNA processing.
 
     0.792
AEH23069.1
PFAM: Creatininase; KEGG: sfu:Sfum_0661 creatininase.
     
 0.762
AEH22616.1
PFAM: Glycosyl transferase, family 39; KEGG: dte:Dester_0129 glycosyl transferase family 39.
  
     0.752
AEH22891.1
PFAM: Glycosyl transferase, family 39; KEGG: hth:HTH_0673 glycosyltransferase, family 39.
  
     0.746
AEH23072.1
Y414 protein; KEGG: aae:aq_1106 hypothetical protein; TIGRFAM: Y414; PFAM: ATP dependent DNA ligase, central.
 
     0.696
AEH23073.1
TIGRFAM: Sirohaem synthase, N-terminal; KEGG: adg:Adeg_1261 siroheme synthase.
       0.608
miaB
(Dimethylallyl)adenosine tRNA methylthiotransferase miaB; Catalyzes the methylthiolation of N6-(dimethylallyl)adenosine (i(6)A), leading to the formation of 2-methylthio-N6- (dimethylallyl)adenosine (ms(2)i(6)A) at position 37 in tRNAs that read codons beginning with uridine.
  
    0.557
AEH23317.1
Hypothetical protein; KEGG: pca:Pcar_1273 glycosyltransferase.
  
     0.529
AEH23387.1
KEGG: pca:Pcar_3121 hypothetical protein.
  
     0.468
AEH22845.1
PFAM: Glycosyl transferase, family 2; KEGG: saf:SULAZ_0943 undecaprenyl-phosphate 4-deoxy-4-formamido-L-arabinose transferase (undecaprenyl-phosphate Ara4FN transferase) (Ara4FN transferase).
  
    0.457
Your Current Organism:
Thermodesulfobacterium geofontis
NCBI taxonomy Id: 795359
Other names: T. geofontis OPF15, Thermodesulfobacterium geofontis OPF15, Thermodesulfobacterium sp. OPF15
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