Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
AEH23097.1PFAM: Xylose isomerase, TIM barrel domain; KEGG: tye:THEYE_A1274 AP endonuclease, family 2. (255 aa)    
Predicted Functional Partners:
AEH23096.1
PFAM: DegT/DnrJ/EryC1/StrS aminotransferase; KEGG: bcd:BARCL_0291 hypothetical protein; Belongs to the DegT/DnrJ/EryC1 family.
       0.780
AEH23098.1
PFAM: Lytic transglycosylase-like, catalytic; KEGG: dpr:Despr_0882 lytic transglycosylase catalytic.
  
    0.774
secF
Protein-export membrane protein SecD; Part of the Sec protein translocase complex. Interacts with the SecYEG preprotein conducting channel. SecDF uses the proton motive force (PMF) to complete protein translocation after the ATP-dependent function of SecA; Belongs to the SecD/SecF family. SecD subfamily.
       0.681
AEH23683.1
Protein of unknown function UPF0153; PFAM: Uncharacterised protein family UPF0153; KEGG: dpr:Despr_1616 hypothetical protein.
 
      0.658
AEH23099.1
ABC-type metal ion transporter, periplasmic subunit; PFAM: ABC transporter metal-binding lipoprotein; KEGG: aae:aq_619 adhesion B precursor.
       0.613
AEH23263.1
KEGG: dte:Dester_0848 PHP domain protein; PFAM: PHP, C-terminal; SMART: Polymerase/histidinol phosphatase, N-terminal.
 
     0.565
AEH23095.1
PFAM: Glycosyl transferase, family 9; KEGG: hth:HTH_1721 glycosyltransferase.
       0.554
Your Current Organism:
Thermodesulfobacterium geofontis
NCBI taxonomy Id: 795359
Other names: T. geofontis OPF15, Thermodesulfobacterium geofontis OPF15, Thermodesulfobacterium sp. OPF15
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