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STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AEH23099.1ABC-type metal ion transporter, periplasmic subunit; PFAM: ABC transporter metal-binding lipoprotein; KEGG: aae:aq_619 adhesion B precursor. (278 aa)    
Predicted Functional Partners:
AEH23372.1
ABC-type transporter, integral membrane subunit; PFAM: ABC-3; KEGG: ipo:Ilyop_2389 ABC-3 protein.
 
 
 0.994
AEH23371.1
ABC transporter related protein; KEGG: bce:BC4279 high-affinity zinc uptake system ATP-binding protein ZnuC; PFAM: ABC transporter-like; SMART: ATPase, AAA+ type, core.
 
 
 0.993
secF
Protein-export membrane protein SecD; Part of the Sec protein translocase complex. Interacts with the SecYEG preprotein conducting channel. SecDF uses the proton motive force (PMF) to complete protein translocation after the ATP-dependent function of SecA; Belongs to the SecD/SecF family. SecD subfamily.
       0.794
rpsZ
Ribosomal protein S14; Binds 16S rRNA, required for the assembly of 30S particles and may also be responsible for determining the conformation of the 16S rRNA at the A site.
  
  
 0.636
rpmB
TIGRFAM: Ribosomal protein L28; HAMAP: Ribosomal protein L28; KEGG: kol:Kole_1660 ribosomal protein L28; PFAM: Ribosomal protein L28; Belongs to the bacterial ribosomal protein bL28 family.
  
  
 0.625
AEH23096.1
PFAM: DegT/DnrJ/EryC1/StrS aminotransferase; KEGG: bcd:BARCL_0291 hypothetical protein; Belongs to the DegT/DnrJ/EryC1 family.
       0.613
AEH23097.1
PFAM: Xylose isomerase, TIM barrel domain; KEGG: tye:THEYE_A1274 AP endonuclease, family 2.
       0.613
AEH23098.1
PFAM: Lytic transglycosylase-like, catalytic; KEGG: dpr:Despr_0882 lytic transglycosylase catalytic.
       0.613
AEH23095.1
PFAM: Glycosyl transferase, family 9; KEGG: hth:HTH_1721 glycosyltransferase.
       0.448
AEH22308.1
NLP/P60 protein; KEGG: tye:THEYE_A1300 probable endopeptidase LytE; PFAM: NLP/P60; Peptidoglycan-binding lysin domain; SMART: Peptidoglycan-binding Lysin subgroup.
 
  
 0.447
Your Current Organism:
Thermodesulfobacterium geofontis
NCBI taxonomy Id: 795359
Other names: T. geofontis OPF15, Thermodesulfobacterium geofontis OPF15, Thermodesulfobacterium sp. OPF15
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