STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AEH23202.1PFAM: Protein of unknown function DUF2276; KEGG: tam:Theam_0867 CRISPR-associated protein Cas6. (283 aa)    
Predicted Functional Partners:
AEH23199.1
KEGG: saf:SULAZ_1604 crispr-associated RAMP protein, Csm3 family; TIGRFAM: CRISPR-associated RAMP Csm3; PFAM: Protein of unknown function DUF324.
 
   
 0.849
AEH23201.1
KEGG: saf:SULAZ_1607 crispr-associated RAMP protein, Csm5 family; TIGRFAM: CRISPR-associated protein, TM1807; PFAM: Protein of unknown function DUF324.
 
   
 0.838
AEH23200.1
KEGG: saf:SULAZ_1605 crispr-associated RAMP protein, Csm4 family; TIGRFAM: Protein of unknown function DUF314; PFAM: Protein of unknown function DUF324.
 
   
 0.830
cas1
CRISPR-associated protein Cas1; CRISPR (clustered regularly interspaced short palindromic repeat), is an adaptive immune system that provides protection against mobile genetic elements (viruses, transposable elements and conjugative plasmids). CRISPR clusters contain spacers, sequences complementary to antecedent mobile elements, and target invading nucleic acids. CRISPR clusters are transcribed and processed into CRISPR RNA (crRNA). Acts as a dsDNA endonuclease. Involved in the integration of spacer DNA into the CRISPR cassette.
 
  
 0.812
cas2
CRISPR-associated protein Cas2; CRISPR (clustered regularly interspaced short palindromic repeat), is an adaptive immune system that provides protection against mobile genetic elements (viruses, transposable elements and conjugative plasmids). CRISPR clusters contain sequences complementary to antecedent mobile elements and target invading nucleic acids. CRISPR clusters are transcribed and processed into CRISPR RNA (crRNA). Functions as a ssRNA-specific endoribonuclease. Involved in the integration of spacer DNA into the CRISPR cassette.
     
 0.801
AEH23203.1
KEGG: toc:Toce_0530 CRISPR-associated protein, MJ1666 family; TIGRFAM: CRISPR-associated protein, MJ1666; PFAM: CRISPR-associated protein DxTHG.
       0.798
AEH23197.1
TIGRFAM: CRISPR-associated protein Csm1; KEGG: saf:SULAZ_1602 crispr-associated protein, Csm1 family.
 
  
 0.785
AEH23204.1
Hypothetical protein.
       0.773
AEH23207.1
CRISPR-associated protein Cas2; TIGRFAM: Protein of unknown function DUF196.
       0.693
AEH23198.1
KEGG: mru:mru_1182 CRISPR-associated protein Csm2 family; TIGRFAM: CRISPR-associated protein, TM1810 C-terminal; PFAM: CRISPR-associated protein, TM1810 C-terminal.
       0.583
Your Current Organism:
Thermodesulfobacterium geofontis
NCBI taxonomy Id: 795359
Other names: T. geofontis OPF15, Thermodesulfobacterium geofontis OPF15, Thermodesulfobacterium sp. OPF15
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