Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
AEH23246.1ABC transporter related protein; KEGG: det:DET0815 FeS assembly ATPase SufC, putative; PFAM: ABC transporter-like; SMART: ATPase, AAA+ type, core. (250 aa)    
Predicted Functional Partners:
AEH23245.1
SufBD protein; PFAM: SUF system FeS cluster assembly, SufBD; KEGG: deb:DehaBAV1_0736 SufBD protein.
 
 0.999
hisC
PFAM: Aminotransferase, class I/II; TIGRFAM: Histidinol-phosphate aminotransferase; HAMAP: Histidinol-phosphate aminotransferase; KEGG: dal:Dalk_0935 histidinol-phosphate aminotransferase; Belongs to the class-II pyridoxal-phosphate-dependent aminotransferase family. Histidinol-phosphate aminotransferase subfamily.
       0.709
AEH23243.1
KEGG: tye:THEYE_A1152 hypothetical protein.
       0.546
rnr
Ribonuclease R; 3'-5' exoribonuclease that releases 5'-nucleoside monophosphates and is involved in maturation of structured RNAs.
       0.505
AEH23247.1
PFAM: DNA methylase N-4/N-6; KEGG: sul:SYO3AOP1_0022 DNA methylase N-4/N-6 domain protein; Belongs to the N(4)/N(6)-methyltransferase family.
       0.502
AEH23248.1
KEGG: sul:SYO3AOP1_0021 conserved hypothetical cytosolic protein.
       0.502
AEH23140.1
KEGG: dol:Dole_2498 hypothetical protein.
  
     0.422
AEH22350.1
Cysteine desulfurase; KEGG: dth:DICTH_0557 aminotransferase, class V superfamily; PFAM: Aminotransferase, class V/Cysteine desulfurase.
  
  
 0.402
Your Current Organism:
Thermodesulfobacterium geofontis
NCBI taxonomy Id: 795359
Other names: T. geofontis OPF15, Thermodesulfobacterium geofontis OPF15, Thermodesulfobacterium sp. OPF15
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